Lesson 5.2: Into the Mitochondrion: Making ATP with Oxygen
Lesson 5.2: Into the Mitochondrion: Making ATP with Oxygen
Lesson Objectives
Relate the history of oxygen in the atmosphere to the evolution of photosynthesis, aerobic respiration, mitochondria, and life on earth.
Describe the fate in eukaryotic cells of the pyruvate molecules produced by glycolysis if oxygen is present.
Recognize that for most organisms, if oxygen is present, the products of glycolysis enter the mitochondria for stage 2 of cellular respiration - the Krebs Cycle.
Trace carbon and hydrogen atoms through the Krebs Cycle.
Analyze the importance of the Krebs Cycle to cellular respiration by following the pathway taken by chemical energy.
Describe the structure of the mitochondrion, and identify the site of Krebs Cycle reactions.
Recognize that electron transport chain is the third and final stage of aerobic cellular respiration.
Describe how chemiosmotic gradients in mitochondria store energy to produce ATP.
Identify the role of oxygen in making stored chemical-bond energy available to cells.
Relate the structure of mitochondria to electron transport chain function and the production of ATP.
Introduction
Enticing clues - volcanic gases, vast iron ore sediments, and bubbles of ancient air trapped in amber – suggest dramatic changes during the history of earth’s atmosphere. Correlating these clues with the fossil record leads to two major conclusions: that early life evolved in the absence of oxygen, and that oxygen first appeared between 2 and 3 billion years ago (Figure 5.13) because of photosynthesis by bluegreen bacteria (Figure 5.14). The chemistry of cellular respiration reflects this history. Its first stage, glycolysis, is universal and does not use oxygen.
Absolutely dependent on oxygen gas, we find it difficult to imagine that its appearance must have been disastrous for the anaerobic organisms that evolved in its absence. But oxygen is highly reactive, and at first, its effect on evolution was so negative that some have named this period the “oxygen catastrophe.” However, as oxygen gradually formed a protective ozone layer, life rebounded. After the first organisms “discovered” how to use oxygen to their advantage – in ways we will explore in this chapter – the diversity of aerobic organisms exploded. According to the endosymbiotic theory, engulfing of some of these aerobic bacteria led to eukaryotic cells with mitochondria, and multicellularity followed. Today, we
live in an atmosphere which is 21% oxygen, and most of life follows glycolysis with the last two, aerobic stages of cellular respiration.
Recall the purpose of cellular respiration: to release energy from glucose to make ATP - the universal “currency” for cellular work. The following equation describes the overall process, although it summarizes many individual chemical reactions.
Once again, the first stage of this process, glycolysis, is ancient, universal, and anaerobic. In the cytoplasm of most cells, glycolysis breaks each 6-carbon molecule of glucose into two 3-carbon molecules of pyruvate. Chemical energy, which had been stored in the now broken bonds, is transferred to 2 ATP and 2 “hot hydrogens,” NADH.
The fate of pyruvate depends on the species and the presence or absence of oxygen. If oxygen is present to drive subsequent reactions, pruvate enters the mitochondrion, where the Krebs Cycle (Stage 2) and electron transport chain (Stage 3) break it down and oxidize it completely to CO2 and H2O. The energy thus released builds many more ATP molecules, though of course some is lost as heat. Let’s explore the details of how mitochondria use oxygen to make more ATP from glucose by aerobic respiration.
The Krebs Cycle: Capturing Energy from Pyruvate
Aerobic respiration begins with the entry of pyruvate (product of glycolysis) into the mito- chondria. We will follow the six carbons of the original glucose molecule, so we will consider two 3-carbon pyruvates. The fate of pyruvate’s energy and carbon atoms can be followed in the examples below:
1. Within the mitochondria, each pyruvate is broken apart and combined with a coenzyme known as CoA to form a 2-carbon molecule, Acetyl CoA, which can enter the Krebs Cycle. A single atom of carbon (per pyruvate) is “lost” as carbon dioxide. The energy released in this breakdown is captured in two “hot hydrogen” – NADH. See Figure
5.15. Fatty acids can also break down into Acetyl CoA. By this means, lipids, like carbohydrates, can be “burned” to make ATP using the Krebs Cycle.
In summary, the Krebs Cycle completes the breakdown of glucose which began with glycol- ysis. Its chemical reactions oxidize all six of the original carbon atoms to CO2, and capture the energy released in 2 ATP, 6 NADH, and 2 FADH2. These energy carriers join the 2 ATP and 2 NADH produced in glycolysis and the 2 NADH produced in the conversion of 2 pyruvates to 2 Acetyl CoA.
At the conclusion of the Krebs Cycle, glucose is completely broken down, yet only four ATP have been produced. Moreover, although oxygen is required to drive the Krebs Cycle, the cycle’s chemical reactions do not themselves consume O2. The conclusion of cellular respiration – its “grand finale!” – produces the majority of the ATP. The next section will explore the electron transport chain, where Stage 3 concludes aerobic cellular respiration.
Figure 5.16: The Krebs or Citric Acid Cycle completes the breakdown of glucose begun in glycolysis. If oxygen is present, pyruvate enters the mitochondria and is converted to Acetyl CoA. Acetyl CoA enters the cycle by combining with 4-carbon oxaloacetate. Study the diagram to confirm that each turn of the cycle (two for each glucose) stores energy in 3 NADH+H+, one FADH2, and one ATP (from GTP), and releases 2 CO2. (14)
Structure of the Mitochondrion: Key to Aerobic Respiration
As noted earlier, the aerobic phases of cellular respiration in eukaryotes occur within or- ganelles called mitochondria. A detailed look at the structure of the mitochondrion (Figure 5.17) helps to explain its role in the last stage of respiration, the electron transport chain.
Two separate membranes form the mitochondrion. The inner membrane folds into cristae which divide the organelle into three compartments – intermembrane space (between outer and inner membranes), cristae space (formed by infoldings of the inner membrane), and matrix (within the inner membrane). The Krebs Cycle takes place within the matrix.
The compartments are critical for the electron transport chain, as we’ll see in the final section of this lesson. Glycolysis occurs in the cytoplasm of the cell, with the products of glycolysis entering the mitochondria to continue cellular respiration.
The Electron Transport Chain: ATP for Life in the Fast Lane
At the end of the Krebs Cycle, energy from the chemical bonds of glucose is stored in diverse energy carrier molecules: four ATP, but also two FADH2 and ten NADH. The primary task of the last stage of cellular respiration, the electron transport chain (ETC), is to transfer energy from these carriers to ATP, the “batteries” which power work within the cell.
Pathways for making ATP in stage 3 of aerobic respiration closely resemble the electron transport chains used in photosynthesis. In both ETCs, energy carrier molecules are ar- ranged in sequence within a membrane so that energy-carrying electrons cascade from one to another, losing a little energy in each step. In both photosynthesis and aerobic respira- tion, the energy lost is harnessed to pump hydrogen ions into a compartment, creating an electrochemical or chemiosmotic gradient across the enclosing membrane. And in both processes, the energy stored in the chemiosmotic gradient is used to build ATP.
For aerobic respiration, the electron transport chain or “respiratory chain” is embedded in the inner membrane of the mitochondria (Figure 5.18). FADH2 and NADH (produced in glycolysis and the Krebs Cycle) donate high-energy electrons to energy carrier molecules within the membrane. As they pass from one carrier to another, the energy they lose is used to pump hydrogen ions into the intermembrane space, creating an electrochemical gradient. Hydrogen ions flow “down” the gradient – from outer to inner compartment – through an ion channel/enzyme, ATP synthase, which transfer their energy to ATP. Note the paradox that it requires energy to create and maintain a concentration gradient of hydrogen ions that are then used by ATP synthase to create stored energy (ATP). In broad terms, it takes energy to make energy. Coupling the electron transport chain to ATP synthesis with a hydrogen ion gradient is chemiosmosis, first described by Nobel laureate Peter D. Mitchell.
Figure 5.17: Mitochondria, organelles specialized to carry out aerobic respiration, contain an inner membrane folded into cristae, which form two separate kinds of compartments: inner membrane space and matrix. The Krebs Cycle takes place in the matrix. The electron transport chain is embedded in the inner membrane and uses both compartments to make ATP by chemiosmosis. (6)
electron transport chain
After passing through the ETC, low-energy electrons and low-energy hydrogen ions combine with oxygen to form water. Thus, oxygen’s role is to drive the entire set of ATP-producing reactions within the mitochondrion by accepting “spent” hydrogens. Oxygen is the final electron acceptor; no part of the process - from the Krebs Cycle through electron transport chain – can happen without oxygen.
The electron transport chain can convert the energy from one glucose molecule’s worth of FADH2 and NADH+H+ into as many as 34 ATP. When the four ATP produced in glycolysis and the Krebs Cycle are added, the total fits the overall equation for aerobic cellular respiration:
Aerobic respiration is complete. If oxygen is available, cellular respiration transfers the energy from one molecule of glucose to 38 molecules of ATP, releasing carbon dioxide and water as waste. “Deliverable” food energy has become energy which can be used for work within the cell – transport within the cell, pumping ions and molecules across membranes, and building large organic molecules. Can you see how this could lead to “life in the fast lane” compared to anaerobic respiration (glycolysis alone)?
Lesson Summary
Introduction to Aerobic Respiration:
The Krebs Cycle (Figure 5.16) begins by combining each Acetyl CoA with a four- carbon carrier molecule to make a 6-carbon molecule of citric acid (or citrate, its ionized form). For this reason, the Krebs Cycle, named for a scientist who worked out its details, is also called the Citric Acid Cycle.
The cycle carries citric acid through a series of chemical reactions which gradually release energy and capture it in several carrier molecules. For each Acetyl CoA which enters the cycle, 3 NAD+ are reduced to NADH, one molecule of FAD (yet another tem-
porary energy carrier we haven’t met before) is reduced to FADH2, and one molecule of ATP (actually a precursor, GTP) is made. Study Figure 5.16 to locate each of these energy-capturing events.
Note what happens to carbon atoms (black dots in Figure 5.16). For each 2-carbon Acetyl CoA which enters the cycle, two molecules of carbon dioxide are released - com- plete breakdown of the original 6-carbon glucose molecule. The final step regenerates the original 4-carbon molecule which began the cycle, so that another Acetyl CoA can enter.
Oxygen produced by the first photosynthetic organisms was probably toxic to the anaerobic life forms which then populated the earth, but later organisms evolved a way to harness the power of oxygen to make ATP. This new pathway was aerobic respiration.
In eukaryotic cells, if oxygen is present, the pyruvate molecules produced by glycolysis in the cytoplasm enter the mitochondria for further breakdown and energy release.
The Krebs Cycle harnesses the energy which remains in pyruvate after glycolysis.
For most organisms, if oxygen is present, the products of glycolysis enter the mito- chondria for stage 2 of cellular respiration - the Krebs cycle.
In the mitochondrion, 3-carbon pyruvate combines with Coenzyme A to form 2-carbon Acetyl CoA and CO2, storing released energy in NADH.
Acetyl CoA enters the Krebs Cycle by combining with a 4-carbon molecule to form citric acid.
The Krebs Cycle removes energy from citric acid in small steps, storing it in diverse energy carrier molecules: ATP, NADH and FADH2.
The Krebs Cycle produces two molecules of CO2 per Acetyl CoA, completing the breakdown of glucose.
Mitochondria are organelles whose membranes are specialized for aerobic respiration.
The matrix of the mitochondria is the site of Krebs Cycle reactions.
The electron transport chain and most ATP synthesis rely on the compartments created by the inner membrane of the mitochondria.
The third and final stage of aerobic cellular respiration, the electron transport chain, accounts for most of the ATP.
Stage 3 transfers the energy from NADH and FADH2 to make ATP.
High-energy electrons from these two energy carriers pass along electron acceptors embedded in the inner membrane of the mitochondria.
As the electrons flow, the electron acceptors capture small amounts of energy to pump hydrogen ions out into the intermembrane space.
These concentrated hydrogen ions store potential energy as an electrochemical gradient.
Hydrogen ions flow back into the inner membrane space through channel proteins, which use their energy to build ATP. This is chemiosmosis.
The ETC coupled with the hydrogen ion flow can build 34 ATP per glucose molecule.
When ATP from glycolysis and the Krebs Cycle are added, a total of 38 ATP result from aerobic respiration of one molecule of glucose.
Summary Animations
Interactive animation depicting the steps of cellular respiration.
http://www.uwmc.uwc.edu/biology/respiration/cellresp.html
Animation detailing the steps of electron transport chain.
http://vcell.ndsu.edu/animations/etc/movie-flash.htm
Animation detailing the H+ concentration gradient and ATP Synthase.
http://vcell.ndsu.edu/animations/atpgradient/movie-flash.htm
Review Questions
Further Reading / Supplemental Links
Explain why the appearance of oxygen in the atmosphere between two and three billions of years ago was both “good news and bad news” for life on Earth.
In eukaryotic cells when oxygen is present, what is the fate of the pyruvate produced in glycolysis?
Trace the six carbon atoms originally from glucose through the Krebs Cycle.
Trace the flow of energy from the pyruvates produced in glycolysis through the Krebs Cycle.
Describe the structure of the mitochondrion, and identify the sites of the Krebs Cycle and the Electron Transport Chain.
Summarize the overall task of Stage 3 of aerobic respiration.
List the steps in stage 3 which produce ATP.
Name the three stages of aerobic cellular respiration. Then write the overall equation, and identify which stage:
uses each reactant
requires each necessary condition and
produces each product.
Explain the principle of chemiosmosis.
Predict the main idea of the next lesson by comparing the energy available to anaerobic organisms, which use just glycolysis to make ATP, to the energy available to aerobic organisms, which use all three stages of cellular respiration to make ATP.
Martin Hoagland, Bert Dodson, and Judith Hauck, Exploring the Way Life Works: The Science of Biology. ones and Bartlett Publishers, Inc., 2001. Chapter 3: “Energy
– Light to Life,” pp. 87-138.
Diana C. Linden and Roberta Pollack, “Chart of Important metabolic products.” In Biology 130 Introduction to Cellular Biochemistry Lectures, Occidental College, last updated 21 October 2000. Available on the web at: http://departments.oxy.edu/ biology/bio130/lectures_2000/metabolic_products.htm
“Electron Transport Chain, The Movie.” Virtual Cell Animation Collection, Molecular
and Cellular Biology Learning Center, 1998-2006. Available on the web at: http:
//vcell.ndsu.nodak.edu/animations/etc/movie.htm
Graham Kent, “An animation of the Tricarboxylic Acid Cycle.” Biology 231 Cell Biol- ogy Laboratory, October 2004. Available on the web at: http://www.science.smith.edu/departments/Biology/Bio231/krebs.html.
Graham Kent, “Electron Transport Chain.” Biology 231 Cell Biology Laboratory, Oc-
tober 2004. Available on the web at: http://www.science.smith.edu/departments/ Biology/Bio231/etc.html.
OSU Marching Band, “Ohio State University presents the Krebs Cycle,” You Tube, 9 October 2006. (http://www.youtube.com/watch?v=FgXnH087JIk.)
John Kyrk, “Animated Krebs Cycle.” Cell Biology Animation, 12 April 2007. Available
on the web at: http://www.johnkyrk.com/krebs.html.
John Kyrk, “Animated essentials of mitochondria and the electron transport chain.” Cell Biology Animation, 12 April 2007. Available on the web at: http://www.johnkyrk.com/mitochondrion.html.
Gabe Simon & Dr. Jeff Brodsky, “Citric Acid Cycle.” Bioscience 1820 Interactive
Pathways Study Guide, 2003.
http://www.pitt.edu/AFShome/j/b/jbrodsky/public/html/1820/tca.htm
Vocabulary
ATP Adenosine triphosphate; the universal energy “currency” for the cell; molecule which stores a usable amount of chemical energy.
ATP synthase Ion channel and enzyme complex that chemically bonds a phosphate group to ADP, making ATP as H+ ions flow through the ion channel.
chemiosmosis Process in cellular respiration or photosynthesis which produces ATP using the energy of hydrogen ions diffusing from high concentration to low.
chemiosmotic gradient In cellular respiration or photosynthesis, a difference in concen- tration of hydrogen ions across a membrane within the mitochondrion or chloroplast set up using energy from an electron transport chain.
cristae The space formed by infoldings of the inner membrane within the mitochondrian.
electrochemical gradient A difference in both electrical charge and chemical concentra- tion across a membrane.
electron transport chain (ETC) A series of electron-carrying molecules which accept and pass along energy-carrying electrons in small steps, allowing the energy lost at each transfer to be captured for storage or work.
endosymbiotic theory The theory which states that chloroplasts and mitochondria orig- inated as independent prokaryotic cells which were engulfed by larger prokaryotic cells to form the first eukaryotic cells.
FADH2 An electron carrier used to deliver energy to the electron transport chain of aerobic respiration.
glycolysis The process of “splitting glucose” - stage 1 of aerobic cellular respiration and also the basis of anaerobic respiration; splits glucose into two 3-carbon pyruvates, producing 2 (net) ATP.
Krebs Cycle Stage 2 of aerobic cellular respiration; a series of chemical reactions which completes the breakdown of glucose begun in stage 1, releasing more chemical energy and producing carbon dioxide; also called the Citric Acid Cycle.
intermembrane space The space between the outer and inner membranes of the mito- chondrian.
matrix The space within the inner membrane of the mitochondrian.
mitochondrion The “powerhouse” organelle in all eukaryotic cells where stages 2 (Krebs Cycle) and 3 (Electron Transport Chain) of aerobic respiration produce ATP.
NADH An electron carrier used to deliver energy to the electron transport chain of aerobic respiration.
Points to Consider
According to the endosymbiotic theory, although some prokaryotes evolved aerobic respiration, eukaryotes took the short-cut of engulfing these prokaryotes rather than “re-inventing the wheel.” The benefits to the “host” cells are obvious. What might have been some of the benefits to the prokaryote?
Cycles, electron transport chains, and chemiosmosis are common to both photosynthe- sis and cellular respiration. Why do you think they’re found in both energy pathways?
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